Browse of TCMCG066C05341 protein

CDS

Accession Number	TCMCG066C05341
gbkey	CDS
Protein Id	XP_034580056.1
Location	join(6656259..6656460,6656577..6656782,6657739..6657879,6657975..6658151,6658745..6658841,6659442..6659554,6659649..6659771,6659862..6659933,6660044..6660136,6660273..6660383,6660486..6660608,6660991..6661179,6661294..6661368,6661554..6661690,6661945..6662079,6662802..6662941,6663091..6663156,6663615..6663721,6663798..6663878,6663952..6664026,6664115..6664216,6664772..6664925,6665002..6665129,6665458..6665541,6665635..6665735,6666182..6666335,6666428..6666502,6666581..6666731,6666933..6667548,6668020..6668080,6668527..6668672,6668748..6668931,6669009..6669107,6669178..6669497,6669586..6669762,6670040..6670136,6670219..6670374,6670466..6670702,6670798..6670881,6671292..6671417)
Gene	LOC117843541
GeneID	117843541
Organism	Setaria viridis

Protein

Length	1904aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA633601
db_source	XM_034724165.1
Definition	rRNA biogenesis protein RRP5 [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category	A
Description	Ribosomal protein S1-like RNA-binding domain
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko03009        [VIEW IN KEGG]
KEGG_ko	ko:K14792        [VIEW IN KEGG]
EC	-
KEGG_Pathway	-
GOs	GO:0000460        [VIEW IN EMBL-EBI] GO:0000462        [VIEW IN EMBL-EBI] GO:0000466        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0003676        [VIEW IN EMBL-EBI] GO:0003723        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005515        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005654        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0005886        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006364        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0007275        [VIEW IN EMBL-EBI] GO:0008134        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009553        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016072        [VIEW IN EMBL-EBI] GO:0022613        [VIEW IN EMBL-EBI] GO:0030490        [VIEW IN EMBL-EBI] GO:0030684        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0032040        [VIEW IN EMBL-EBI] GO:0032501        [VIEW IN EMBL-EBI] GO:0032502        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0034470        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0034660        [VIEW IN EMBL-EBI] GO:0042254        [VIEW IN EMBL-EBI] GO:0042274        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044085        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0048229        [VIEW IN EMBL-EBI] GO:0048856        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0071944        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0097159        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901363        [VIEW IN EMBL-EBI] GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGCGCCGCCGCGCGGCGATAGGAAGAAGGGGAAGGGCGGTGGCGGCGGCAAGACCGACCTGCGGCCCGACCGCAAGCAGTTCAAAAAGCACCGCAAGGAGGAGGCGGCGTCTGAGCAGGGGGATTGCGACGGGGAGCGCCAGCAGCCGGGCTCCGCCGCGCTCCTCGCCGCGGCGTCCGACGAAGCTGACTTCCCGAGAGGGGGACGCAGCTTCCTCAGCAAGGACGAGGTGGCGGAGGCCCGCGCGGAGGCCGAGGAGGATTTCGAGAGGGAGGGGAAGAAGGGGAAGAGGAAGAGGAAGGCCAGCGAGTCGTCTGGTTTCGGTGCGGATGATGACTTGGGGACGCTCTTCGGCGGGGCCACCACCGGGAAGCTCCCACGATTTGCTAATCGCATCACACTGAAGAATGTTTCACCAAATATGAAGCTCTGGGGTGTTGTAATTGAGGTTAACCAAAAAGATATTGTATTAAGTCTACCTGGTGGAATGAGAGGGTTTGTTCGCTCAGAGGATGTATGTGACATCGCTTTGCATGAAAATCGTAAGGATAGCGAGAACAGTATATGTGCTGAAGTCGTTCATGTTGGTCAGCTTGTTCCTTGTATAGTCCTGCGAGTTGATGATGACAGGAAAGAAGGAAAAGTAAACAGAAGGGTTTGGCTATCATTGCGATTAAGCCAGCTGTACAAGGGACTTTCTCTGGATGCCTTGCAGGAAGGAATGGTACTTGCTGCCCAAGTTAAAAGTGTTGAGGACCATGGTTACATTCTTCATTTTGGAGTACCTTCCTTCAGTGGATTTATGCAAAAGGCTGACAAAGAAAATGTGAAGATTGAGCCCAGACAACTGATACAATGTGTTGTGAAGGCTATCGACAAAACTCGGGCTATTGTTCACTTGAGTTCTGATGAAGACTTGGTTTCTAAATCTATTATTAAAGATCTGAAGGGCCTTTCCATTGATCATTTGATTCCTGGGATGATGGTTAATGCACGTGTCCATTCAGTTCTTGAAAATGGAGTAATGTTATCATTCCTTACTTATTTCAGTGGAACTGTTGACATCTTTAATTTGTCAAATCCCTTTCCCTCTGGTAATTGGAAAGATGGTTACAGTAAGAATAAGAAGGTAAATGCTCGCATCCTATTCGTTGATCCATCAACGAGGGCAGTTGGGCTTACATTGAACAAACATTTACTTCATCTTGAAGTGCCCCCTATTAATCTAAAAGCTGGAGATATCTACGATAAATCAAAGGTGTTGAGGATAGATAAAAAGGCTGGTCTTTTTCTTGAAATACCTTCTTCAACTCCATCACCTGGATTTATTAGTATACATGATGTGTCAGACAAAGATGTGAAGAACTTGGAGAAGAAGTTTAAGGAAGGCAGTAGCCTACGCGTCCGTATACTTGGAGTGCGAAATCTTGAAGGAGTTGCAATAGGCACAGTAAAAGACAGTGCTTTTGAAGGATCTGTTTTCACTCATGATGATGTTAAACCTGGAATGTTAGTGAGAGCTAAGGTTGTTACTGTTGAGCCATTTGGTGCAATCGTGCAGTTTTCCAGTGGTGTGAAAGCACTTTGCCCGCTTCCACACATGTCAGAGTTGGAACATGTTGTAAAACCACCAAAGAAATTTAAGGCTGGAGCTGAGCTTCTATTCCGTGTATTGGGCTGCAAATCCAAGAGAGTTACAGTGACATGCAAGAAGTCTCTGGTGAAATCAAAACTTGATGTGCTGGCATCGTATGCTGATGCTAAAGTCGGTTTAGTGACTCATGGATGGATTGCTAAAATCGAAAAGCATGGTTGCTTTGTAAAATTCTATAACGGAGTTCAGGGTTTTGTTAGCAGATCTGAGCTTGGATTAGAGGCAGGAACTGAAGCGGAAAATGTTTATCATGTTGGGCAAGTCATCAAATGTAGAATTATCAGTGTGCTCCCTGCTTCAAGGAGAATAAACGTTAGTTTTGTCATATCTCATAATAGGATTATTCCAGCAGATATTGCAAAGTTGGGTAGTATTGTCTCGGGTGTTGTGGAGCGGCTTACTCCTGCTGCTGTTGTTGTCAGTGTAAATGGCTTCTCCAAGGGGACAATACTTAATGAACATTTGGCAGACCATCATGGTCAAGCTGCTCAGTTGAAGAATTTGCTGAAACCTGGGCACGAGTTCAACCAACTCTTAGTTCTCGATATCGAAGGCCAAAATTTAGTTCTTTCAGCAAAGCACTCACTTATCAATAGCTCAAATGACATTCCTTCAGAGATACTGCAGATGCATCCTGGAGCTGTAGTTCATGGTTATATTTGCAACATCATAGAAGCTGGTTGTTTTGTCCGCTTTCTTGGACATTTGACTGGTTTCTCTCCCAAGGACAAAGCAGTTGATAGGCGGGTGGAAAAGCTTTCTGATGCGTTCTATGTTGGCCAGTCAGTTCGGAGTCATATACTCAGCGTAAACGCAGAAACTGCTAGAGTAAAACTCTCACTTCAACAGTCAATGTGCTCCTCAACGGATTCTTCGTTTATTCAAGGATACTTTCTTTTGGATCAGAAGATTTCGGCATTGAAGTACTCAAGCCATGATTGGGCTCACGCTTTTGGCATTGGTAGCCTAGTTGAGGGGGAGGTGGGGGCAATAGAAGAATATGGTATTGTCCTTAACTTCAATGACCATCCGGATGTTGTTGGTTTAATTGAACATCATCAACTCAGTGACAGTACTCTAGAAGTGGGGTCTTCTGTGAAGGGCCTTGTTTTGGATTTATCTGATGGAGTTGTTAACTTATCCCTTAAACCAGAGCTAATTAGTAGTGTCAGAATTGGTGGAACAAAGAAGAAACGCCAAAGGCCTACAGTTGCAGACTTGGAGCTTCATGAGGAAGTGAATGCAGTTGTGGAGATAGTCAAAGAGAGCTATGTGGTTCTTTCAATCCCCGAGTATAACTATGCAATTGGTTTTGCATCACTGATGGATTACAACTCACAACTGCTTGCCACCCACCGCTATGATAATGGGCAACGCATTACTGTGGTTGTTGGAAATATCCCAAGTTCTGACCCGTCTGGAAGGCTCATCCTACTCCCTAAAGCATCAGCCCAGGATTCTGGCCTGTCTGGTTCTAAAAGGGCTAAGAAAAAATCAGAATACAAAGTTGGGTCACTTGTTGAAGCAGAGATAATTGATATCAAGCCACTAGAACTAATACTGAAATTTGGTGCCAATCTTCATGGAAGAATTCATATTACCGAGGTTCTTGAAGAGGATTCTGCTGAGCGTCCCTTTAGTAAACTCAGAATCGGGCAAAAGCTTACTGCCAGAATTGTTGCAGAGGCTGAACCTTCTGGAAAGAATGGCAAAAATTTCAAATGGGAATTGTCTATTAGACCGTCTATGCTTAAGGGTGAGTTTGAAGAATCAACTGCTCATAAAGAAGAATTTAATCACACCACGAATGTGGTTGTGTGTGGTTATGTCGTCAGAGTGGATAAGGAATGGGTCTGGTTAACTGTATCAAGAAATGTTATGGCTCATTTGTTTATTCTGGATAGTTCTTCTGACCCCAGCGAACTAAAACAGTTCCAGCAGCGCTTTAGTGTAGGCCAAGCAGTAAAAGGCTGTGTTATTAGTGTGAACCGGGAGAAAAGATTGCTTAGGGTGAAAGCACTTGATAACCAATGTGCACAACATAATATAGACAAAATACAACAATCAGAGTCCTCGTTGGTTGAACAAACAAAACAAGGAGATGTCATTGGTGGACGTGTTCAAAAAATTCTACCTGGTGTTGGTGGACTTGTCGTTCAGATTGGACCTCATCTTCATGGAAGGGTTCATTATACTGAAATTGTCGACTCATGGGTGGCAGACCCCTTGTCTGGATTCCATGAGGGTCAGTTTGTGAAGTGCAAGGTCCTGTCTGTAAGCCGCTCATCTGAAGGATCTCTTCGAGTTGATCTATCACTCCGCTCATCAAACATACACACAGATTCTAGCAATTCAAGACTATTTGATGAAGGGGCAACCTGTATCCCACGGATTGAGAAGATAGAGGATCTGCTTCCTGGAACTGAGATTAAGGGCTATGTGAAGAATGTTAATCCCAAAGGATGTTTTATTATGCTTTCTCGAATGGTTGAGGCTAGGATTACTCTGTCAAATTTATCAGATGAATACGTTGAAAATCCTCAGAAGGATTTCCCTGTTGGAATGCTTGTACATGGAAGGGTCTTGTCTACGGACCCATCATCAGGGAGAGTTGAGGCGTCACTTAGGAAGAACACTGGTAGCAAATTAGAAAAGCCGGATGATATTAATTATAGTGATTTACATGTTGGGGACGTCATTGATGGCCAAGTTAAGCGGGTTGAATCCTATGGATTATTTGTCACAATTAGGAGCAGTGAATTGGTTGGTCTGTGCCATGTATCAGAACTTTCTGATGAGCCAGTCCTTGATATTAACTCTTGCTATAAAGCTGGTGATATGGTCAAAGCCAAAATTTTGAAGATCGATGAGAAGCGGCACCGAGTATCCCTTGGAATGAAGAAATCATACTTTGATTGTGGTCTGACTGCTGGTACAAATGATGATGATGAAATTGCTCCTATGGACATCAGCATTGCCTCTCAGGTTGCAGGATATCACAACAAAGTTCATCCCGCAGCAGAACCAAGGGCTTCTGTGCTGCCTCTTCAGGTCTCCTTGGATGAATCTGAAGGTTCTGACCTAGAGGATAATGGTAATGAAGGCCATGAAATTGCCAATGGATCTGAAGCAAATGCTAAAAAGAGTGACAAACGGTTGAAGAAGGAAGCAAGGAAACAAAGGGAATTAGAAATCAGTGCCTTGGAGGAAAGGGCATTACAGGGAGATATACCGAGAACTCCAGATGATTTTGAGAAGTTGGTCAGGAGCTCACCGAATAGTAGTTTTGTCTGGATAAAATATATGGCGTGTTTGTTAGATCTTGCAGATGTTGAGAAAGCACGTGCAGTAGCAGAGAGGGCTTTAAAAACAATAATCCCCAGAGAAGAGGAGGAAAGACTTAATGTTTGGGTAGCATATTTCAATCTGGAAAATGAATATGGGAGTCCACGGGAGGATGCTGTCAAGAAGGTATTCCAAAGAGCCTTGCAATACTGTGATCACAAAAAGTTGCACTTGGCCCTTCTCGCAGTGTACGAGAGGACTGAGCAGTACGAACTTGCAGATGAACTTCTTGATAGAATGACCAAAAGATTCAAAACTTCCTGCAAGATATGGTTATGCCGTATTCAGTTTGCCCTCAAGCAAGGCAAGGATGTTGAGTACATCAAAGCTGTTGTAAACCGTGCGCTTCTGAGTTTGCCACAGAGAAAGCGTATAAAATTCCTCTCGAAGACAGCTATTCTAGAATTCAAGTGTGGGGCGCCTGAAGAAGGAAGGTCCAGATTTGAACTAATCTTACGGGAGTACCCAAAAAGAACAGATCTTTGGAGTGTTTATCTAGACCAAGAAATCCGCCTTGGTGACATAGAAGTTATAAGGGGATTATTTGATAAGGCTACTTGTCTTACCCTACCTCCAAAAAAGATGCAGTTCTTGTTCAAGAAGTACCTTAAGTTCGAGAAGTCGCTGGGTGAAGACAATGAAAGGATCCAGCATGTGCAGCAGATAGCAATGAAATATGTTCAGAGTTCACTGCCATCCGAAAGCCACCCCTGA

Protein:   MAPPRGDRKKGKGGGGGKTDLRPDRKQFKKHRKEEAASEQGDCDGERQQPGSAALLAAASDEADFPRGGRSFLSKDEVAEARAEAEEDFEREGKKGKRKRKASESSGFGADDDLGTLFGGATTGKLPRFANRITLKNVSPNMKLWGVVIEVNQKDIVLSLPGGMRGFVRSEDVCDIALHENRKDSENSICAEVVHVGQLVPCIVLRVDDDRKEGKVNRRVWLSLRLSQLYKGLSLDALQEGMVLAAQVKSVEDHGYILHFGVPSFSGFMQKADKENVKIEPRQLIQCVVKAIDKTRAIVHLSSDEDLVSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFSGTVDIFNLSNPFPSGNWKDGYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRIDKKAGLFLEIPSSTPSPGFISIHDVSDKDVKNLEKKFKEGSSLRVRILGVRNLEGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKAGAELLFRVLGCKSKRVTVTCKKSLVKSKLDVLASYADAKVGLVTHGWIAKIEKHGCFVKFYNGVQGFVSRSELGLEAGTEAENVYHVGQVIKCRIISVLPASRRINVSFVISHNRIIPADIAKLGSIVSGVVERLTPAAVVVSVNGFSKGTILNEHLADHHGQAAQLKNLLKPGHEFNQLLVLDIEGQNLVLSAKHSLINSSNDIPSEILQMHPGAVVHGYICNIIEAGCFVRFLGHLTGFSPKDKAVDRRVEKLSDAFYVGQSVRSHILSVNAETARVKLSLQQSMCSSTDSSFIQGYFLLDQKISALKYSSHDWAHAFGIGSLVEGEVGAIEEYGIVLNFNDHPDVVGLIEHHQLSDSTLEVGSSVKGLVLDLSDGVVNLSLKPELISSVRIGGTKKKRQRPTVADLELHEEVNAVVEIVKESYVVLSIPEYNYAIGFASLMDYNSQLLATHRYDNGQRITVVVGNIPSSDPSGRLILLPKASAQDSGLSGSKRAKKKSEYKVGSLVEAEIIDIKPLELILKFGANLHGRIHITEVLEEDSAERPFSKLRIGQKLTARIVAEAEPSGKNGKNFKWELSIRPSMLKGEFEESTAHKEEFNHTTNVVVCGYVVRVDKEWVWLTVSRNVMAHLFILDSSSDPSELKQFQQRFSVGQAVKGCVISVNREKRLLRVKALDNQCAQHNIDKIQQSESSLVEQTKQGDVIGGRVQKILPGVGGLVVQIGPHLHGRVHYTEIVDSWVADPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRSSNIHTDSSNSRLFDEGATCIPRIEKIEDLLPGTEIKGYVKNVNPKGCFIMLSRMVEARITLSNLSDEYVENPQKDFPVGMLVHGRVLSTDPSSGRVEASLRKNTGSKLEKPDDINYSDLHVGDVIDGQVKRVESYGLFVTIRSSELVGLCHVSELSDEPVLDINSCYKAGDMVKAKILKIDEKRHRVSLGMKKSYFDCGLTAGTNDDDEIAPMDISIASQVAGYHNKVHPAAEPRASVLPLQVSLDESEGSDLEDNGNEGHEIANGSEANAKKSDKRLKKEARKQRELEISALEERALQGDIPRTPDDFEKLVRSSPNSSFVWIKYMACLLDLADVEKARAVAERALKTIIPREEEERLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDHKKLHLALLAVYERTEQYELADELLDRMTKRFKTSCKIWLCRIQFALKQGKDVEYIKAVVNRALLSLPQRKRIKFLSKTAILEFKCGAPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDIEVIRGLFDKATCLTLPPKKMQFLFKKYLKFEKSLGEDNERIQHVQQIAMKYVQSSLPSESHP